QCB lab

Control principles in cell decision making: lessons from quantitative biology

Our Research

Cell division and cellular differentiation as paradigm systems to understand cell-decision making 

Multidisciplinary approaches have revolutionised the way we ask biological questions and have been crucial to understanding spatio-temporal control principles in cell decision-making

During cell decision-making, gene and protein networks dynamically change in response to cues in order to trigger different cellular states. How information is decoded and transmitted in order to commit to specific cell fates has been a fundamental question in cell and developmental biology. One way to understand this is to quantitatively monitor input-output relationships in single cells during decision-making. In this context,The quantitative cell biology lab aims to monitor how signalling molecules are organized into circuits, how these circuits are spatio-temporally regulated and how they remodel during two important cellular decisions: cell division and cellular differentiation.

Quantitative Cell Biology

Figure 1: Examples of mammalian cells expressing biosensors we routinely use in the lab to monitor cell cycle dynamics in single cells

The decision to divide is a fundamental decision and the conserved networks that trigger cell division adapt and remodel in a variety of biological contexts including developmental transitions and malignancy. We have been exploring spatio-temporal control of cell division in mammalian cells (Santos et al Cell 2012, Araujo et al Mol Cell 2016) and remodelling of cell cycle networks during developmental transitions, using embryonic stem cells as a model system.

Screen Shot 2017-08-08 at 17.49.12

Figure 2: Mammalian cells undergoing mitosis. Nucleus and microtubules are highlighted using fluorescent H2B and Tubulin, respectively

Embryonic stem cells have the propensity to differentiate into the three germ layers. The switch between pluripotency and differentiation in these cells has been our paradigm of choice to understand how protein and gene networks decode cellular signals and thereby encode irreversible commitment to different cell fates.

24h merge

Figure 3: Differentiating colony of human embryonic stem cells expressing lineage specific biomarkers.

Both lines of investigation are likely to have profound impact in the understanding of normal human development and the transition from healthy to disease states.

We use quantitative approaches combining experimental methods (based on live cell imaging, molecular biology, biochemistry and chemical biology) with mathematical modelling. This combination of experiments and theory has been key to uncover regulatory principles in cell decision-making.

Quantitative Cell Biology

Figure 4: Different methodologies used in the lab a. Imaging b. Mass spectrometry and RNAseq c. reverse engineering approaches d. data analysis e. mathematical modelling f. network reconstruction